Still need to figure out the proper way to run the wiring harness along the frame. Need to properly preload the springs and then put the airbox in.

From the back of the loom:
1) The main loom comes off the stator/stator cover, through two metal loops bolted to the center stator cover bolt and the other top center case bolt next the upper case saver threads on the chain side
2) then the loom lay across the back of the cases just behind the carb, then up the back of the frame down tube just behind the lick starter and over to back bone where it plugs in to the 5/6 bullet connectors.
3) The main portion of the wiring harness lays just under the back bone on the kick starter side next to the throttle cable and other wires coming from the front through rectangular hole on the kick starter side radiator mount plate (where the steering column is mounted)
4) the CDI harness comes across the top of the back bone just behind the open box on the front of the back bone and connects the main harness coming from the rear of the back bone.
5) The other parts that meet the harness coming from the rear, (I believe, I can't remember exactly) come from the front through the same rectangular box on the kick start side of the steering column mount plate along with the throttle cable & upper radiator tube. 

Hope that helps